Index

_

__call__() (epyr.lineshapes.Lineshape method), [1] (epyr.lineshapes.lineshape_class.Lineshape method) __init__() (epyr.baseline.interactive.RegionSelector method) (epyr.baseline.RegionSelector method), [1] (epyr.cli.InteractiveMeasurementTool method) (epyr.fair.validation.ValidationResult method) (epyr.fair.ValidationResult method), [1] (epyr.isotope_gui.IsotopesGUI method), [1], [2] (epyr.isotope_gui.ToolTip method), [1], [2] (epyr.lineshapes.FitResult method), [1] (epyr.lineshapes.fitting.FitResult method) (epyr.lineshapes.Lineshape method), [1] (epyr.lineshapes.lineshape_class.Lineshape method) (epyr.performance.DataCache method) (epyr.performance.OptimizedLoader method) (epyr.plugins.BasePlugin method) (epyr.plugins.PluginManager method)

__repr__() (epyr.lineshapes.Lineshape method), [1] (epyr.lineshapes.lineshape_class.Lineshape method) __str__() (epyr.lineshapes.Lineshape method), [1] (epyr.lineshapes.lineshape_class.Lineshape method)

A

absorption() (epyr.lineshapes.Lineshape method), [1] (epyr.lineshapes.lineshape_class.Lineshape method) add_error() (epyr.fair.validation.ValidationResult method) (epyr.fair.ValidationResult method), [1] add_info() (epyr.fair.validation.ValidationResult method) (epyr.fair.ValidationResult method), [1] add_warning() (epyr.fair.validation.ValidationResult method) (epyr.fair.ValidationResult method), [1] analyze_frequencies() (in module epyr.signalprocessing) (in module epyr.signalprocessing.frequency_analysis), [1] analyze_frequencies_2d() (in module epyr.signalprocessing) (in module epyr.signalprocessing.frequency_analysis), [1]

apowin() (in module epyr.signalprocessing), [1] (in module epyr.signalprocessing.apowin) append_fair_metadata() (in module epyr.fair), [1] (in module epyr.fair.data_processing), [1] apply_window_demo() (in module epyr.signalprocessing) (in module epyr.signalprocessing.apowin) auto_baseline_with_recommendations() (in module epyr.baseline), [1] (in module epyr.baseline.auto) avogadro() (in module epyr.physics) (in module epyr.physics.constants), [1]

B

baseline_auto_1d() (in module epyr.baseline), [1] (in module epyr.baseline.auto) baseline_bi_exponential_1d() (in module epyr.baseline), [1] (in module epyr.baseline.correction) baseline_polynomial_1d() (in module epyr.baseline), [1] (in module epyr.baseline.correction) baseline_polynomial_2d() (in module epyr.baseline), [1] (in module epyr.baseline.correction) baseline_stretched_exponential_1d() (in module epyr.baseline), [1] (in module epyr.baseline.correction) BasePlugin (class in epyr.plugins)

batch_convert_directory() (in module epyr.fair), [1] (in module epyr.fair.conversion), [1] bi_exponential_1d() (in module epyr.baseline), [1] (in module epyr.baseline.models) bmagn() (in module epyr.physics) (in module epyr.physics.constants), [1] boltzm() (in module epyr.physics) (in module epyr.physics.constants), [1] both_components() (epyr.lineshapes.Lineshape method), [1] (epyr.lineshapes.lineshape_class.Lineshape method) BrukerListFiles() (in module epyr.sub.utils)

C

calculate_distance() (epyr.cli.InteractiveMeasurementTool method) can_load() (epyr.plugins.FileFormatPlugin method) can_save() (epyr.plugins.FileFormatPlugin method) check_memory_limit() (epyr.performance.MemoryMonitor static method) chi_squared (epyr.lineshapes.FitResult attribute), [1], [2], [3] (epyr.lineshapes.fitting.FitResult attribute), [1] cleanup() (epyr.plugins.BasePlugin method) clear() (epyr.performance.DataCache method) clear_measurements() (epyr.cli.InteractiveMeasurementTool method) clight() (in module epyr.physics) (in module epyr.physics.constants), [1] close_selector_window() (in module epyr.baseline), [1] (in module epyr.baseline.interactive) cm_inv_to_mhz() (in module epyr.physics) (in module epyr.physics.conversions), [1] cmd_baseline() (in module epyr.cli) cmd_batch_convert() (in module epyr.cli) cmd_config() (in module epyr.cli) cmd_convert() (in module epyr.cli) cmd_info() (in module epyr.cli) cmd_isotopes() (in module epyr.cli) cmd_plot() (in module epyr.cli) cmd_plot_with_args() (in module epyr.cli) cmd_validate() (in module epyr.cli) cmd_view() (in module epyr.cli) combine_masks() (in module epyr.baseline.selection) compare_models_detailed() (in module epyr.baseline), [1] (in module epyr.baseline.auto)

config (in module epyr) configure() (in module epyr.baseline), [1] constants_summary() (in module epyr.physics) (in module epyr.physics.constants), [1] conversion_examples() (in module epyr.physics.conversions), [1] convert_bruker_to_fair() (in module epyr.fair), [1] (in module epyr.fair.conversion), [1] convspec() (in module epyr.lineshapes), [1], [2] covariance_matrix (epyr.lineshapes.FitResult attribute), [1], [2], [3] (epyr.lineshapes.fitting.FitResult attribute), [1] create_center_exclusion_mask_1d() (in module epyr.baseline.selection) create_center_exclusion_mask_2d() (in module epyr.baseline.selection) create_edge_exclusion_mask_1d() (in module epyr.baseline.selection) create_gaussian() (in module epyr.lineshapes), [1] (in module epyr.lineshapes.lineshape_class) create_interactive_plot_with_measurements() (in module epyr.cli) create_lorentzian() (in module epyr.lineshapes), [1] (in module epyr.lineshapes.lineshape_class) create_pseudo_voigt() (in module epyr.lineshapes), [1] (in module epyr.lineshapes.lineshape_class) create_region_mask_1d() (in module epyr.baseline), [1] (in module epyr.baseline.selection) create_region_mask_2d() (in module epyr.baseline), [1] (in module epyr.baseline.selection) create_validation_report() (in module epyr.fair), [1] (in module epyr.fair.validation) create_voigt() (in module epyr.lineshapes), [1] (in module epyr.lineshapes.lineshape_class) CSVExportPlugin (class in epyr.plugins)

D

DataCache (class in epyr.performance) demo() (in module epyr.signalprocessing.apowin) (in module epyr.signalprocessing.frequency_analysis), [1] demo_conversions() (in module epyr.physics) (in module epyr.physics.units), [1]

derivative() (epyr.lineshapes.Lineshape method), [1] (epyr.lineshapes.lineshape_class.Lineshape method) disable() (epyr.cli.InteractiveMeasurementTool method) discover_plugins() (epyr.plugins.PluginManager method) dispersion() (epyr.lineshapes.Lineshape method), [1] (epyr.lineshapes.lineshape_class.Lineshape method)

E

echarge() (in module epyr.physics) (in module epyr.physics.constants), [1] element_class() (in module epyr.isotope_gui), [1], [2] enable() (epyr.cli.InteractiveMeasurementTool method) energy_conversion_table() (in module epyr.physics) (in module epyr.physics.conversions), [1] enter() (epyr.isotope_gui.ToolTip method), [1], [2] eprload() (in module epyr) (in module epyr.eprload), [1] epyr module, [1] epyr.baseline module, [1] epyr.baseline.auto module epyr.baseline.correction module epyr.baseline.interactive module epyr.baseline.models module epyr.baseline.selection module epyr.cli module epyr.constants module epyr.eprload module, [1] epyr.eprplot module epyr.fair module, [1] epyr.fair.conversion module, [1] epyr.fair.data_processing module, [1] epyr.fair.exporters module, [1] epyr.fair.parameter_mapping module, [1] epyr.fair.validation module epyr.isotope_gui module, [1], [2] epyr.lineshapes module, [1]

epyr.lineshapes.fitting module epyr.lineshapes.lineshape_class module epyr.logging_config module epyr.performance module epyr.physics module epyr.physics.constants module, [1] epyr.physics.conversions module, [1] epyr.physics.units module, [1] epyr.plot module, [1], [2], [3], [4] epyr.plugins module epyr.signalprocessing module epyr.signalprocessing.apowin module epyr.signalprocessing.frequency_analysis module, [1] epyr.sub module epyr.sub.loadBES3T module epyr.sub.loadESP module epyr.sub.utils module evolt() (in module epyr.physics) (in module epyr.physics.constants), [1] exponential_1d() (in module epyr.baseline), [1] (in module epyr.baseline.models) export() (epyr.plugins.CSVExportPlugin method) (epyr.plugins.ExportPlugin method) export_format (epyr.plugins.CSVExportPlugin attribute) (epyr.plugins.ExportPlugin attribute) export_plugins (epyr.plugins.PluginManager attribute) ExportPlugin (class in epyr.plugins) extract_axis_info() (in module epyr.fair), [1] (in module epyr.fair.data_processing), [1]

F

file_extension (epyr.plugins.CSVExportPlugin attribute) (epyr.plugins.ExportPlugin attribute) file_extensions (epyr.plugins.FileFormatPlugin attribute) file_format_plugins (epyr.plugins.PluginManager attribute) FileFormatPlugin (class in epyr.plugins) finish_selection() (epyr.baseline.interactive.RegionSelector method) (epyr.baseline.RegionSelector method), [1] fit_epr_signal() (in module epyr.lineshapes), [1] (in module epyr.lineshapes.fitting) fit_multiple_shapes() (in module epyr.lineshapes), [1] (in module epyr.lineshapes.fitting)

FitResult (class in epyr.lineshapes), [1] (class in epyr.lineshapes.fitting) fitted_curve (epyr.lineshapes.FitResult attribute), [1], [2], [3] (epyr.lineshapes.fitting.FitResult attribute), [1] format_name (epyr.plugins.FileFormatPlugin attribute) frequency_field_conversion_table() (in module epyr.physics) (in module epyr.physics.conversions), [1] frequency_response_demo() (in module epyr.signalprocessing) (in module epyr.signalprocessing.apowin) frequency_to_magnetic_field() (in module epyr.physics) (in module epyr.physics.constants), [1]

G

gamma_hz() (in module epyr.physics) (in module epyr.physics.constants), [1] gaussian() (in module epyr.lineshapes), [1], [2] gaussian_absorption() (in module epyr.lineshapes), [1] gaussian_derivative() (in module epyr.lineshapes), [1] gaussian_dispersion() (in module epyr.lineshapes), [1] get() (epyr.performance.DataCache method) get_baseline_regions_1d() (in module epyr.baseline), [1] (in module epyr.baseline.selection) get_baseline_regions_2d() (in module epyr.baseline), [1] (in module epyr.baseline.selection) get_configuration() (in module epyr.baseline), [1] get_experiment_summary() (in module epyr.fair.data_processing), [1] get_export_plugin() (epyr.plugins.PluginManager method) get_file_format_plugin() (epyr.plugins.PluginManager method) get_global_cache() (in module epyr.performance)

get_info() (epyr.plugins.BasePlugin method) get_logger() (in module epyr.logging_config) get_matrix() (in module epyr.sub.utils) get_memory_info() (epyr.performance.MemoryMonitor static method) get_model_function() (in module epyr.baseline), [1] (in module epyr.baseline.models) get_model_recommendations() (in module epyr.baseline), [1] (in module epyr.baseline.auto) get_performance_info() (in module epyr.performance) get_processing_plugin() (epyr.plugins.PluginManager method) get_stats() (epyr.performance.DataCache method) get_summary() (epyr.fair.validation.ValidationResult method) (epyr.fair.ValidationResult method), [1] get_supported_extensions() (epyr.plugins.PluginManager method) gfree() (in module epyr.physics) (in module epyr.physics.constants), [1]

H

hbar() (in module epyr.physics) (in module epyr.physics.constants), [1]

I

info() (epyr.lineshapes.Lineshape method), [1] (epyr.lineshapes.lineshape_class.Lineshape method) initialize() (epyr.plugins.BasePlugin method) (epyr.plugins.CSVExportPlugin method) input_requirements (epyr.plugins.ProcessingPlugin attribute) interactive_select_regions_1d() (in module epyr.baseline), [1] (in module epyr.baseline.interactive)

interactive_select_regions_2d() (in module epyr.baseline), [1] (in module epyr.baseline.interactive) InteractiveMeasurementTool (class in epyr.cli) is_interactive_available() (in module epyr.baseline), [1] (in module epyr.baseline.interactive) IsotopesGUI (class in epyr.isotope_gui), [1], [2]

J

jupyter_help() (in module epyr.baseline), [1] (in module epyr.baseline.interactive)

L

leave() (epyr.isotope_gui.ToolTip method), [1], [2] Lineshape (class in epyr.lineshapes), [1] (class in epyr.lineshapes.lineshape_class) list_available_models() (in module epyr.baseline), [1] (in module epyr.baseline.models) list_conversions() (in module epyr.physics) (in module epyr.physics.units), [1] list_plugins() (epyr.plugins.PluginManager method) load() (epyr.plugins.FileFormatPlugin method) (in module epyr.sub.loadBES3T) (in module epyr.sub.loadESP)

load_chunked_data() (epyr.performance.OptimizedLoader method) load_epr_file() (epyr.performance.OptimizedLoader method) loaded_plugins (epyr.plugins.PluginManager attribute) lorentzian() (in module epyr.lineshapes), [1], [2] lorentzian_absorption() (in module epyr.lineshapes), [1] lorentzian_derivative() (in module epyr.lineshapes), [1] lorentzian_dispersion() (in module epyr.lineshapes), [1] lshape() (in module epyr.lineshapes), [1], [2]

M

magnetic_field_to_frequency() (in module epyr.physics) (in module epyr.physics.constants), [1] main() (in module epyr.cli) MemoryMonitor (class in epyr.performance) message (epyr.lineshapes.FitResult attribute), [1], [2], [3] (epyr.lineshapes.fitting.FitResult attribute), [1] mhz_to_cm_inv() (in module epyr.physics) (in module epyr.physics.conversions), [1] mhz_to_mt() (in module epyr.physics) (in module epyr.physics.conversions), [1] module epyr, [1] epyr.baseline, [1] epyr.baseline.auto epyr.baseline.correction epyr.baseline.interactive epyr.baseline.models epyr.baseline.selection epyr.cli epyr.constants epyr.eprload, [1] epyr.eprplot epyr.fair, [1] epyr.fair.conversion, [1] epyr.fair.data_processing, [1] epyr.fair.exporters, [1] epyr.fair.parameter_mapping, [1] epyr.fair.validation epyr.isotope_gui, [1], [2] epyr.lineshapes, [1] epyr.lineshapes.fitting epyr.lineshapes.lineshape_class epyr.logging_config epyr.performance epyr.physics epyr.physics.constants, [1] epyr.physics.conversions, [1] epyr.physics.units, [1] epyr.plot, [1], [2], [3], [4] epyr.plugins epyr.signalprocessing epyr.signalprocessing.apowin epyr.signalprocessing.frequency_analysis, [1] epyr.sub epyr.sub.loadBES3T epyr.sub.loadESP epyr.sub.utils

mt_to_mhz() (in module epyr.physics) (in module epyr.physics.conversions), [1]

N

nmagn() (in module epyr.physics) (in module epyr.physics.constants), [1]

O

on_click() (epyr.cli.InteractiveMeasurementTool method) optimize_memory() (epyr.performance.MemoryMonitor static method)

optimize_numpy_operations() (in module epyr.performance) OptimizedLoader (class in epyr.performance) output_types (epyr.plugins.ProcessingPlugin attribute)

P

parameter_errors (epyr.lineshapes.FitResult attribute), [1], [2], [3] (epyr.lineshapes.fitting.FitResult attribute), [1] parameters (epyr.lineshapes.FitResult attribute), [1], [2], [3] (epyr.lineshapes.fitting.FitResult attribute), [1] parse_field_params() (in module epyr.sub.utils) planck() (in module epyr.physics) (in module epyr.physics.constants), [1] plot_1d() (in module epyr.eprplot) (in module epyr.plot), [1], [2], [3], [4] plot_2d_map() (in module epyr.eprplot) (in module epyr.plot), [1], [2], [3], [4] plot_2d_slicer() (in module epyr.eprplot) (in module epyr.plot), [1], [2], [3], [4] plot_2d_waterfall() (in module epyr.eprplot) (in module epyr.plot), [1], [2], [3], [4] plugin_author (epyr.plugins.BasePlugin attribute) plugin_description (epyr.plugins.BasePlugin attribute)

plugin_name (epyr.plugins.BasePlugin attribute) (epyr.plugins.CSVExportPlugin attribute) plugin_version (epyr.plugins.BasePlugin attribute) PluginManager (class in epyr.plugins) polynomial_1d() (in module epyr.baseline), [1] (in module epyr.baseline.models) polynomial_2d() (in module epyr.baseline), [1] (in module epyr.baseline.models) power_spectrum() (in module epyr.signalprocessing) (in module epyr.signalprocessing.frequency_analysis), [1] process() (epyr.plugins.ProcessingPlugin method) process_parameters() (in module epyr.fair), [1] (in module epyr.fair.data_processing), [1] processing_name (epyr.plugins.ProcessingPlugin attribute) processing_plugins (epyr.plugins.PluginManager attribute) ProcessingPlugin (class in epyr.plugins) pseudo_voigt() (in module epyr.lineshapes), [1] put() (epyr.performance.DataCache method)

R

r_squared (epyr.lineshapes.FitResult attribute), [1], [2], [3] (epyr.lineshapes.fitting.FitResult attribute), [1] read_dsc_file() (in module epyr.sub.utils) read_par_file() (in module epyr.sub.utils) RegionSelector (class in epyr.baseline), [1] (class in epyr.baseline.interactive)

register_plugin() (epyr.plugins.PluginManager method) residuals (epyr.lineshapes.FitResult attribute), [1], [2], [3] (epyr.lineshapes.fitting.FitResult attribute), [1] rgb_to_hex() (in module epyr.isotope_gui), [1], [2] run_gui() (in module epyr.isotope_gui), [1], [2]

S

save() (epyr.plugins.FileFormatPlugin method) save_fair() (in module epyr.fair), [1] (in module epyr.fair.conversion), [1] (in module epyr.fair.exporters), [1] save_to_csv() (in module epyr.fair), [1] (in module epyr.fair.exporters), [1] save_to_csv_json() (in module epyr.fair), [1] (in module epyr.fair.exporters), [1] save_to_hdf5() (in module epyr.fair), [1] (in module epyr.fair.exporters), [1] save_to_jpg() (in module epyr.fair), [1] (in module epyr.fair.exporters), [1] save_to_json() (in module epyr.fair), [1] (in module epyr.fair.exporters), [1] select_regions_1d() (epyr.baseline.interactive.RegionSelector method) (epyr.baseline.RegionSelector method), [1] select_regions_2d() (epyr.baseline.interactive.RegionSelector method) (epyr.baseline.RegionSelector method), [1] set_alpha() (epyr.lineshapes.Lineshape method), [1] (epyr.lineshapes.lineshape_class.Lineshape method) set_derivative() (epyr.lineshapes.Lineshape method), [1] (epyr.lineshapes.lineshape_class.Lineshape method) set_phase() (epyr.lineshapes.Lineshape method), [1] (epyr.lineshapes.lineshape_class.Lineshape method)

set_width() (epyr.lineshapes.Lineshape method), [1] (epyr.lineshapes.lineshape_class.Lineshape method) setup_inline_backend() (in module epyr.baseline), [1] setup_interactive_backend() (in module epyr.baseline), [1] (in module epyr.baseline.interactive) setup_logging() (in module epyr.logging_config) setup_notebook_backend() (in module epyr.baseline), [1] setup_widget_backend() (in module epyr.baseline), [1] shape_type (epyr.lineshapes.FitResult attribute), [1], [2], [3] (epyr.lineshapes.fitting.FitResult attribute), [1] spectrogram_analysis() (in module epyr.signalprocessing) (in module epyr.signalprocessing.frequency_analysis), [1] stretched_exponential_1d() (in module epyr.baseline), [1] (in module epyr.baseline.models) success (epyr.lineshapes.FitResult attribute), [1], [2], [3] (epyr.lineshapes.fitting.FitResult attribute), [1] summary() (epyr.lineshapes.FitResult method), [1] (epyr.lineshapes.fitting.FitResult method) SUPPORTED_SHAPES (epyr.lineshapes.Lineshape attribute), [1] (epyr.lineshapes.lineshape_class.Lineshape attribute) supports_loading (epyr.plugins.FileFormatPlugin attribute) supports_metadata (epyr.plugins.ExportPlugin attribute) supports_saving (epyr.plugins.FileFormatPlugin attribute)

T

thermal_energy() (in module epyr.physics) (in module epyr.physics.constants), [1]

ToolTip (class in epyr.isotope_gui), [1], [2]

U

unitconvert() (in module epyr.physics) (in module epyr.physics.units), [1]

unregister_plugin() (epyr.plugins.PluginManager method)

V

validate_conversion() (in module epyr.fair.conversion), [1] validate_data_integrity() (in module epyr.fair.validation) validate_epr_parameters() (in module epyr.fair.validation) validate_fair_dataset() (in module epyr.fair), [1] (in module epyr.fair.validation) validate_fair_metadata() (in module epyr.fair.data_processing), [1] (in module epyr.fair.validation) validate_file_format() (in module epyr.fair.validation)

validate_input() (epyr.plugins.ProcessingPlugin method) validate_regions_1d() (in module epyr.baseline), [1] (in module epyr.baseline.selection) validate_regions_2d() (in module epyr.baseline), [1] (in module epyr.baseline.selection) ValidationResult (class in epyr.fair), [1] (class in epyr.fair.validation) voigtian() (in module epyr.lineshapes), [1], [2]

W

wavelength_to_frequency() (in module epyr.physics) (in module epyr.physics.constants), [1]

window_comparison() (in module epyr.signalprocessing) (in module epyr.signalprocessing.apowin)

X

x_fit (epyr.lineshapes.FitResult attribute), [1], [2], [3] (epyr.lineshapes.fitting.FitResult attribute), [1]